Detailed information of SNP:
|
SNP ID:
sf1004389452(Gbrowse)
Chromosome: chr10 Position: 4389452 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 74.82% | 25.18% |
| All Indica | 786 | 69.85% | 30.15% |
| All Japonica | 483 | 93.37% | 6.63% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 367 | 58.86% | 41.14% |
| Indica II | 211 | 80.57% | 19.43% |
| Indica Intermediate | 208 | 78.37% | 21.63% |
| Temperate Japonica | 327 | 95.72% | 4.28% |
| Tropical Japonica | 89 | 84.27% | 15.73% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004389452 | C->A | INTERGENIC | None |