Detailed information of SNP:
|
SNP ID:
sf1004389514(Gbrowse)
Chromosome: chr10 Position: 4389514 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 95.81% | 4.19% |
| All Indica | 767 | 93.09% | 6.91% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 362 | 94.75% | 5.25% |
| Indica II | 203 | 90.15% | 9.85% |
| Indica Intermediate | 202 | 93.07% | 6.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004389514 | G->A | INTERGENIC | None |