Detailed information of SNP:
|
SNP ID:
sf1004391311(Gbrowse)
Chromosome: chr10 Position: 4391311 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 92.65% | 7.35% |
| All Indica | 783 | 87.36% | 12.64% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 88.04% | 11.96% |
| Indica II | 208 | 88.94% | 11.06% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004391311 | T->C | LOC_Os10g08080(LOC_Os10g08080.1) | Synonymous |