Detailed information of SNP:
|
SNP ID:
sf1004391397(Gbrowse)
Chromosome: chr10 Position: 4391397 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 67.95% | 32.05% |
| All Indica | 763 | 60.55% | 39.45% |
| All Japonica | 488 | 89.14% | 10.86% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 362 | 48.62% | 51.38% |
| Indica II | 203 | 70.94% | 29.06% |
| Indica Intermediate | 198 | 71.72% | 28.28% |
| Temperate Japonica | 330 | 92.12% | 7.88% |
| Tropical Japonica | 91 | 78.02% | 21.98% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004391397 | G->A | LOC_Os10g08080(LOC_Os10g08080.1) | Non-Synonymous SNP |