Detailed information of SNP:
|
SNP ID:
sf1004391756(Gbrowse)
Chromosome: chr10 Position: 4391756 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 72.59% | 27.41% |
| All Indica | 779 | 87.93% | 12.07% |
| All Japonica | 480 | 45.21% | 54.79% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 360 | 88.33% | 11.67% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 326 | 32.52% | 67.48% |
| Tropical Japonica | 88 | 84.09% | 15.91% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004391756 | A->G | LOC_Os10g08080(LOC_Os10g08080.1) | Non-Synonymous SNP |