Detailed information of SNP:
|
SNP ID:
sf1004393363(Gbrowse)
Chromosome: chr10 Position: 4393363 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 75.49% | 24.51% |
| All Indica | 764 | 70.42% | 29.58% |
| All Japonica | 486 | 94.44% | 5.56% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 359 | 59.61% | 40.39% |
| Indica II | 199 | 81.91% | 18.09% |
| Indica Intermediate | 206 | 78.16% | 21.84% |
| Temperate Japonica | 329 | 96.66% | 3.34% |
| Tropical Japonica | 89 | 83.15% | 16.85% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004393363 | C->T | LOC_Os10g08080(LOC_Os10g08080.1) | SNPs that introduce stop codons |