Detailed information of SNP:
|
SNP ID:
sf1004393719(Gbrowse)
Chromosome: chr10 Position: 4393719 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1341 | 67.19% | 32.81% |
| All Indica | 734 | 58.17% | 41.83% |
| All Japonica | 484 | 90.91% | 9.09% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 345 | 50.43% | 49.57% |
| Indica II | 199 | 67.34% | 32.66% |
| Indica Intermediate | 190 | 62.63% | 37.37% |
| Temperate Japonica | 328 | 94.82% | 5.18% |
| Tropical Japonica | 91 | 72.53% | 27.47% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004393719 | A->G | LOC_Os10g08080(LOC_Os10g08080.1) | Synonymous |