Detailed information of SNP:
|
SNP ID:
sf1004397025(Gbrowse)
Chromosome: chr10 Position: 4397025 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 96.50% | 3.50% |
| All Indica | 792 | 98.36% | 1.64% |
| All Japonica | 486 | 92.80% | 7.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 324 | 90.12% | 9.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004397025 | C->T | LOC_Os10g08090(LOC_Os10g08090.1) | INTRON |