Detailed information of SNP:
|
SNP ID:
sf1004410035(Gbrowse)
Chromosome: chr10 Position: 4410035 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 88.37% | 11.63% |
| All Indica | 737 | 79.51% | 20.49% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 352 | 84.66% | 15.34% |
| Indica II | 196 | 75.00% | 25.00% |
| Indica Intermediate | 189 | 74.60% | 25.40% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004410035 | G->A | LOC_Os10g08130(LOC_Os10g08130.1) | Non-Synonymous SNP |