Detailed information of SNP:
|
SNP ID:
sf1004412982(Gbrowse)
Chromosome: chr10 Position: 4412982 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 76.20% | 23.80% |
| All Indica | 794 | 95.59% | 4.41% |
| All Japonica | 495 | 41.01% | 58.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 334 | 28.14% | 71.86% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004412982 | T->C | INTERGENIC | None |