Detailed information of SNP:
|
SNP ID:
sf1004432206(Gbrowse)
Chromosome: chr10 Position: 4432206 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 60.71% | 39.29% |
| All Indica | 755 | 43.58% | 56.42% |
| All Japonica | 482 | 80.08% | 19.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 46.84% | 53.16% |
| Indica II | 209 | 40.19% | 59.81% |
| Indica Intermediate | 198 | 41.41% | 58.59% |
| Temperate Japonica | 324 | 79.01% | 20.99% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004432206 | C->T | INTERGENIC | None |