Detailed information of SNP:
|
SNP ID:
sf1004467343(Gbrowse)
Chromosome: chr10 Position: 4467343 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 95.39% | 4.61% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004467343 | G->A | LOC_Os10g08240(LOC_Os10g08240.1) | INTRON |