Detailed information of SNP:
|
SNP ID:
sf1004498603(Gbrowse)
Chromosome: chr10 Position: 4498603 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 54.56% | 45.44% |
| All Indica | 797 | 44.67% | 55.33% |
| All Japonica | 483 | 80.12% | 19.88% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 46.40% | 53.60% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 210 | 33.33% | 66.67% |
| Temperate Japonica | 321 | 98.44% | 1.56% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004498603 | C->T | INTERGENIC | None |