Detailed information of SNP:
|
SNP ID:
sf1004498745(Gbrowse)
Chromosome: chr10 Position: 4498745 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 97.95% | 2.05% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 94.70% | 5.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004498745 | C->T | INTERGENIC | None |