Detailed information of SNP:
|
SNP ID:
sf1004532109(Gbrowse)
Chromosome: chr10 Position: 4532109 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.97% | 8.03% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 85.37% | 14.63% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004532109 | G->A | INTERGENIC | None |