Detailed information of SNP:
|
SNP ID:
sf1004539522(Gbrowse)
Chromosome: chr10 Position: 4539522 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.90% | 21.10% |
| All Indica | 799 | 76.72% | 23.28% |
| All Japonica | 495 | 92.93% | 7.07% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 65.33% | 34.67% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004539522 | G->A | INTERGENIC | None |