Detailed information of SNP:
|
SNP ID:
sf1004551549(Gbrowse)
Chromosome: chr10 Position: 4551549 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 89.42% | 10.58% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 497 | 81.29% | 18.71% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 73.73% | 26.27% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004551549 | T->C | LOC_Os10g08370(LOC_Os10g08370.1) | INTRON |