Detailed information of SNP:
|
SNP ID:
sf1004569358(Gbrowse)
Chromosome: chr10 Position: 4569358 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 71.61% | 28.39% |
| All Indica | 797 | 56.09% | 43.91% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 54.40% | 45.60% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 209 | 67.46% | 32.54% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004569358 | G->A | INTERGENIC | None |