Detailed information of SNP:
|
SNP ID:
sf1004571899(Gbrowse)
Chromosome: chr10 Position: 4571899 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 77.92% | 22.08% |
| All Indica | 794 | 62.47% | 37.53% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 56.68% | 43.32% |
| Indica II | 211 | 63.03% | 36.97% |
| Indica Intermediate | 209 | 72.25% | 27.75% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004571899 | A->T | LOC_Os10g08390(LOC_Os10g08390.1) | Non-Synonymous SNP |