Detailed information of SNP:
|
SNP ID:
sf1004573964(Gbrowse)
Chromosome: chr10 Position: 4573964 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 76.72% | 23.28% |
| All Indica | 795 | 60.63% | 39.37% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 55.50% | 44.50% |
| Indica II | 211 | 59.24% | 40.76% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004573964 | G->A | LOC_Os10g08390(LOC_Os10g08390.1) | Non-Synonymous SNP |