Detailed information of SNP:
|
SNP ID:
sf1004574139(Gbrowse)
Chromosome: chr10 Position: 4574139 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 50.84% | 49.16% |
| All Indica | 763 | 55.70% | 44.30% |
| All Japonica | 494 | 44.53% | 55.47% |
| Aus | 58 | 32.76% | 67.24% |
| Indica I | 348 | 62.93% | 37.07% |
| Indica II | 210 | 61.90% | 38.10% |
| Indica Intermediate | 205 | 37.07% | 62.93% |
| Temperate Japonica | 335 | 34.33% | 65.67% |
| Tropical Japonica | 91 | 78.02% | 21.98% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004574139 | A->G | LOC_Os10g08390(LOC_Os10g08390.1) | Non-Synonymous SNP |