Detailed information of SNP:
|
SNP ID:
sf1004577166(Gbrowse)
Chromosome: chr10 Position: 4577166 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.25% | 36.75% |
| All Indica | 798 | 54.76% | 45.24% |
| All Japonica | 497 | 71.43% | 28.57% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 53.33% | 46.67% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 68.36% | 31.64% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004577166 | C->T | INTERGENIC | None |