Detailed information of SNP:
|
SNP ID:
sf1004577809(Gbrowse)
Chromosome: chr10 Position: 4577809 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.57% | 27.43% |
| All Indica | 798 | 57.52% | 42.48% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 55.47% | 44.53% |
| Indica II | 212 | 49.06% | 50.94% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004577809 | G->A | INTERGENIC | None |