Detailed information of SNP:
|
SNP ID:
sf1004583073(Gbrowse)
Chromosome: chr10 Position: 4583073 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 77.21% | 22.79% |
| All Indica | 797 | 95.98% | 4.02% |
| All Japonica | 497 | 44.67% | 55.33% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 29.55% | 70.45% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004583073 | G->A | INTERGENIC | None |