Detailed information of SNP:
|
SNP ID:
sf1004583255(Gbrowse)
Chromosome: chr10 Position: 4583255 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 92.82% | 7.18% |
| All Indica | 781 | 88.22% | 11.78% |
| All Japonica | 490 | 99.18% | 0.82% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 366 | 84.97% | 15.03% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004583255 | C->T | INTERGENIC | None |