Detailed information of SNP:
|
SNP ID:
sf1004584586(Gbrowse)
Chromosome: chr10 Position: 4584586 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 74.61% | 25.39% |
| All Indica | 787 | 65.18% | 34.82% |
| All Japonica | 496 | 86.69% | 13.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 78.11% | 21.89% |
| Indica II | 207 | 60.39% | 39.61% |
| Indica Intermediate | 210 | 47.14% | 52.86% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004584586 | C->T | INTERGENIC | None |