Detailed information of SNP:
|
SNP ID:
sf1004588903(Gbrowse)
Chromosome: chr10 Position: 4588903 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.15% | 47.85% |
| All Indica | 799 | 56.45% | 43.55% |
| All Japonica | 497 | 37.83% | 62.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 27.46% | 72.54% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004588903 | T->C | INTERGENIC | None |