Detailed information of SNP:
|
SNP ID:
sf1004589094(Gbrowse)
Chromosome: chr10 Position: 4589094 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 72.84% | 27.16% |
| All Indica | 795 | 58.24% | 41.76% |
| All Japonica | 496 | 92.74% | 7.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 56.42% | 43.58% |
| Indica II | 210 | 50.48% | 49.52% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004589094 | G->A | INTERGENIC | None |