Detailed information of SNP:
|
SNP ID:
sf1004589979(Gbrowse)
Chromosome: chr10 Position: 4589979 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 51.62% | 48.38% |
| All Indica | 797 | 55.83% | 44.17% |
| All Japonica | 497 | 37.42% | 62.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 212 | 46.70% | 53.30% |
| Indica Intermediate | 210 | 66.19% | 33.81% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004589979 | A->C | LOC_Os10g08420(LOC_Os10g08420.1) | Non-Synonymous SNP |