Detailed information of SNP:
|
SNP ID:
sf1004599424(Gbrowse)
Chromosome: chr10 Position: 4599424 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 68.55% | 31.45% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 19.32% | 80.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004599424 | C->T | INTERGENIC | None |