Detailed information of SNP:
|
SNP ID:
sf1004607857(Gbrowse)
Chromosome: chr10 Position: 4607857 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 95.66% | 4.34% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 486 | 90.12% | 9.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 83 | 57.83% | 42.17% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004607857 | G->A | LOC_Os10g08450(LOC_Os10g08450.1) | Non-Synonymous SNP |