Detailed information of SNP:
|
SNP ID:
sf1004618916(Gbrowse)
Chromosome: chr10 Position: 4618916 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 96.30% | 3.70% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 484 | 90.08% | 9.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 82 | 92.68% | 7.32% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004618916 | G->A | LOC_Os10g08474(LOC_Os10g08474.1) | Synonymous |