Detailed information of SNP:
|
SNP ID:
sf1004635425(Gbrowse)
Chromosome: chr10 Position: 4635425 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.53% | 22.47% |
| All Indica | 797 | 68.13% | 31.87% |
| All Japonica | 495 | 89.29% | 10.71% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004635425 | G->A | INTERGENIC | None |