Detailed information of SNP:
|
SNP ID:
sf1004635521(Gbrowse)
Chromosome: chr10 Position: 4635521 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 50.46% | 49.54% |
| All Indica | 799 | 39.17% | 60.83% |
| All Japonica | 497 | 76.46% | 23.54% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 45.87% | 54.13% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 84.48% | 15.52% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004635521 | T->G | INTERGENIC | None |