Detailed information of SNP:
|
SNP ID:
sf1004639834(Gbrowse)
Chromosome: chr10 Position: 4639834 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 70.81% | 29.19% |
| All Indica | 789 | 59.57% | 40.43% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 53.49% | 46.51% |
| Indica II | 210 | 63.33% | 36.67% |
| Indica Intermediate | 207 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004639834 | G->A | INTERGENIC | None |