Detailed information of SNP:
|
SNP ID:
sf1004639838(Gbrowse)
Chromosome: chr10 Position: 4639838 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 67.64% | 32.36% |
| All Indica | 790 | 54.56% | 45.44% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 65 | 80.00% | 20.00% |
| Indica I | 370 | 48.65% | 51.35% |
| Indica II | 211 | 57.35% | 42.65% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004639838 | G->A | INTERGENIC | None |