Detailed information of SNP:
|
SNP ID:
sf1004640223(Gbrowse)
Chromosome: chr10 Position: 4640223 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 72.18% | 27.82% |
| All Indica | 786 | 60.56% | 39.44% |
| All Japonica | 496 | 86.49% | 13.51% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 373 | 53.62% | 46.38% |
| Indica II | 208 | 65.38% | 34.62% |
| Indica Intermediate | 205 | 68.29% | 31.71% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004640223 | T->A | INTERGENIC | None |