Detailed information of SNP:
|
SNP ID:
sf1004641080(Gbrowse)
Chromosome: chr10 Position: 4641080 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 93.98% | 6.02% |
| All Indica | 795 | 98.99% | 1.01% |
| All Japonica | 497 | 87.12% | 12.88% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004641080 | T->C | INTERGENIC | None |