Detailed information of SNP:
|
SNP ID:
sf1004641752(Gbrowse)
Chromosome: chr10 Position: 4641752 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 64.70% | 35.30% |
| All Indica | 795 | 57.99% | 42.01% |
| All Japonica | 497 | 74.04% | 25.96% |
| Aus | 61 | 90.16% | 9.84% |
| Indica I | 375 | 52.53% | 47.47% |
| Indica II | 212 | 59.91% | 40.09% |
| Indica Intermediate | 208 | 65.87% | 34.13% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004641752 | A->G | INTERGENIC | None |