Detailed information of SNP:
|
SNP ID:
sf1004642347(Gbrowse)
Chromosome: chr10 Position: 4642347 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 71.79% | 28.21% |
| All Indica | 795 | 60.63% | 39.37% |
| All Japonica | 497 | 86.72% | 13.28% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 374 | 54.28% | 45.72% |
| Indica II | 211 | 63.51% | 36.49% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004642347 | G->A | LOC_Os10g08530(LOC_Os10g08530.1) | INTRON |