Detailed information of SNP:
|
SNP ID:
sf1004643841(Gbrowse)
Chromosome: chr10 Position: 4643841 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.65% | 24.35% |
| All Indica | 798 | 63.41% | 36.59% |
| All Japonica | 496 | 91.94% | 8.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 56.80% | 43.20% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004643841 | G->A | LOC_Os10g08530(LOC_Os10g08530.1) | INTRON |