Detailed information of SNP:
|
SNP ID:
sf1004669131(Gbrowse)
Chromosome: chr10 Position: 4669131 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1338 | 52.99% | 47.01% |
| All Indica | 742 | 34.23% | 65.77% |
| All Japonica | 475 | 91.16% | 8.84% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 346 | 39.31% | 60.69% |
| Indica II | 197 | 31.47% | 68.53% |
| Indica Intermediate | 199 | 28.14% | 71.86% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 76 | 55.26% | 44.74% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004669131 | A->G | INTERGENIC | None |