Detailed information of SNP:
|
SNP ID:
sf1004670817(Gbrowse)
Chromosome: chr10 Position: 4670817 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 92.75% | 7.25% |
| All Indica | 705 | 88.94% | 11.06% |
| All Japonica | 485 | 96.70% | 3.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 311 | 86.17% | 13.83% |
| Indica II | 202 | 91.09% | 8.91% |
| Indica Intermediate | 192 | 91.15% | 8.85% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 87 | 89.66% | 10.34% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004670817 | G->A | LOC_Os10g08560(LOC_Os10g08560.1) | Non-Synonymous SNP |