Detailed information of SNP:
|
SNP ID:
sf1004671180(Gbrowse)
Chromosome: chr10 Position: 4671180 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 56.77% | 43.23% |
| All Indica | 754 | 34.22% | 65.78% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 340 | 37.65% | 62.35% |
| Indica II | 208 | 33.17% | 66.83% |
| Indica Intermediate | 206 | 29.61% | 70.39% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004671180 | T->A | INTERGENIC | None |