Detailed information of SNP:
|
SNP ID:
sf1004692204(Gbrowse)
Chromosome: chr10 Position: 4692204 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.76% | 48.24% |
| All Indica | 798 | 60.28% | 39.72% |
| All Japonica | 497 | 31.79% | 68.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 55.35% | 44.65% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 24.18% | 75.82% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004692204 | T->C | LOC_Os10g08610(LOC_Os10g08610.1) | Non-Synonymous SNP |