Detailed information of SNP:
|
SNP ID:
sf1004706931(Gbrowse)
Chromosome: chr10 Position: 4706931 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 84.06% | 15.94% |
| All Indica | 752 | 75.40% | 24.60% |
| All Japonica | 494 | 94.74% | 5.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 69.71% | 30.29% |
| Indica II | 201 | 76.12% | 23.88% |
| Indica Intermediate | 201 | 84.58% | 15.42% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004706931 | C->T | INTERGENIC | None |