Detailed information of SNP:
|
SNP ID:
sf1004732271(Gbrowse)
Chromosome: chr10 Position: 4732271 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 66.17% | 33.83% |
| All Indica | 785 | 88.92% | 11.08% |
| All Japonica | 496 | 26.41% | 73.59% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 365 | 85.21% | 14.79% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004732271 | T->C | LOC_Os10g08696(LOC_Os10g08696.1) | INTRON |