Detailed information of SNP:
|
SNP ID:
sf1004732650(Gbrowse)
Chromosome: chr10 Position: 4732650 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1152 | 90.10% | 9.90% |
| All Indica | 621 | 85.83% | 14.17% |
| All Japonica | 425 | 95.06% | 4.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 315 | 91.11% | 8.89% |
| Indica II | 155 | 79.35% | 20.65% |
| Indica Intermediate | 151 | 81.46% | 18.54% |
| Temperate Japonica | 328 | 97.87% | 2.13% |
| Tropical Japonica | 44 | 81.82% | 18.18% |
| Japonica Intermediate | 53 | 88.68% | 11.32% |
| Group VI/Aromatic | 5 | 80.00% | 20.00% |
| Intermediate | 34 | 88.24% | 11.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004732650 | T->C | LOC_Os10g08696(LOC_Os10g08696.1) | INTRON |