Detailed information of SNP:
|
SNP ID:
sf1004735834(Gbrowse)
Chromosome: chr10 Position: 4735834 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 63.98% | 36.02% |
| All Indica | 779 | 86.52% | 13.48% |
| All Japonica | 477 | 27.04% | 72.96% |
| Aus | 59 | 52.54% | 47.46% |
| Indica I | 361 | 82.83% | 17.17% |
| Indica II | 209 | 90.43% | 9.57% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 333 | 5.11% | 94.89% |
| Tropical Japonica | 88 | 93.18% | 6.82% |
| Japonica Intermediate | 56 | 53.57% | 46.43% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004735834 | T->C | LOC_Os10g08702(LOC_Os10g08702.1) | Synonymous |