Detailed information of SNP:
|
SNP ID:
sf1004738059(Gbrowse)
Chromosome: chr10 Position: 4738059 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 94.58% | 5.42% |
| All Indica | 748 | 90.24% | 9.76% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 87.82% | 12.18% |
| Indica II | 198 | 91.92% | 8.08% |
| Indica Intermediate | 197 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004738059 | A->T | LOC_Os10g08702(LOC_Os10g08702.1) | INTRON |